Co-expression analysis

Gene ID PtpAffx.72988.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g55310: TOP1BETA (DNA TOPOISOMERASE 1 BETA) (HF=7e-73)
Module size 10 genes
NF 0.39
%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.96PtpAffx.72988.1.S1_atCK107497hypothetical protein-7e-73At5g55310TOP1BETA (DNA TOPOISOMERASE 1 BETA)O.I.H.G.S.X.
0.4875.40.96PtpAffx.221573.1.S1_atpmrna38525hypothetical protein-1e-4At5g52530dentin sialophosphoprotein-relatedO.I.H.G.S.X.
0.4673.70.97PtpAffx.213907.1.S1_s_atpmrna27117hypothetical protein-5e-54At3g28690protein kinase, putativeO.I.H.G.S.X.
0.4167.70.97PtpAffx.111718.1.S1_atCF230834--1e-7At5g02770unknown proteinO.I.H.G.S.X.
0.3863.70.97PtpAffx.17757.2.S1_s_atBI138883hypothetical protein-2e-33At3g02420unknown proteinO.I.H.G.S.X.
0.3559.70.96PtpAffx.206456.1.S1_s_atpmrna12808hypothetical protein-2e-12At3g11960cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing proteinO.I.H.G.S.X.
0.3458.30.96PtpAffx.222642.1.S1_s_atpmrna40188hypothetical protein-2e-12At5g25150TAF5 (TBP-ASSOCIATED FACTOR 5)O.I.H.G.S.X.
0.3357.50.97PtpAffx.78955.1.S1_atBU876794hypothetical protein-6e-55At4g24550clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.3255.20.97PtpAffx.126112.1.S1_s_atBP923608hypothetical protein-3e-109At5g11490adaptin family proteinO.I.H.G.S.X.
0.2340.50.96PtpAffx.63140.2.S1_s_atDN500684hypothetical protein-7e-11At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.0GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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