Co-expression analysis

Gene ID PtpAffx.72354.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g14104: unknown protein (HF=3e+0)
Module size 7 genes
NF 0.56
%ile 86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.96PtpAffx.72354.1.S1_atBU889551hypothetical protein-3e+0At4g14104unknown proteinO.I.H.G.S.X.
0.7794.90.96PtpAffx.15088.1.S1_atCF936886hypothetical protein-7e-3At5g12330LRP1 (LATERAL ROOT PRIMORDIUM 1)O.I.H.G.S.X.
0.7192.60.96Ptp.7446.1.S1_atBU814736hypothetical protein-2e+0At3g21710unknown proteinO.I.H.G.S.X.
0.6187.00.96Ptp.3640.1.S1_atBU895250hypothetical protein-7e-2At4g09890unknown proteinO.I.H.G.S.X.
0.5380.50.96PtpAffx.149893.1.S1_s_atDN486606hypothetical protein-1e-8At3g12950catalyticO.I.H.G.S.X.
0.4067.00.96PtpAffx.157405.1.S1_atCF233029hypothetical protein-2e-2At4g09467-O.I.H.G.S.X.
0.2950.50.96Ptp.5711.1.S1_atAJ849329.1auxin efflux carrier component-2e-7At1g73590PIN1 (PIN-FORMED 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.10.95PtpAffx.162327.1.S1_atCA823774hypothetical protein-9e-1At1g15165U-box domain-containing proteinO.I.H.G.S.X.
0.5784.20.88PtpAffx.10384.2.S1_atCB240311--1e+0At3g22530unknown proteinO.I.H.G.S.X.
0.5582.20.96Ptp.5913.1.S1_s_atCV244093AP2/ERF domain-containing transcription factor-2e-15At1g28360ERF12 (ERF DOMAIN PROTEIN 12)O.I.H.G.S.X.
0.4673.70.92PtpAffx.215960.1.S1_atpmrna30445hypothetical protein-6e-14At2g47810NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5)O.I.H.G.S.X.
0.4673.70.94Ptp.44.1.A1_atCK088023hypothetical protein-8e-15At5g10970zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4268.60.94PtpAffx.215889.1.S1_s_atpmrna30347hypothetical protein-2e-1At1g05400unknown proteinO.I.H.G.S.X.
0.4067.00.93PtpAffx.84688.1.S1_atCV243797hypothetical protein-6e-9At5g24860FPF1 (FLOWERING PROMOTING FACTOR 1)O.I.H.G.S.X.
0.3863.70.94PtpAffx.95409.1.S1_s_atCV247239hypothetical protein-8e-2At4g09890unknown proteinO.I.H.G.S.X.
0.3661.60.93PtpAffx.97141.1.A1_atCK097916multidrug/pheromone exporter, MDR family, ABC transporter family-3e-2At3g28345ABC transporter family proteinO.I.H.G.S.X.
0.3559.70.93PtpAffx.4962.1.S1_atCV267650hypothetical protein-1e-20At5g51550EXL3 (EXORDIUM LIKE 3)O.I.H.G.S.X.
0.3559.70.95PtpAffx.212396.1.S1_atpmrna24286hypothetical protein-7e-10At1g71870MATE efflux family proteinO.I.H.G.S.X.
0.3357.50.89PtpAffx.89016.1.A1_s_atCV242005hypothetical protein-1e+0At5g57640-O.I.H.G.S.X.
0.3357.50.93PtpAffx.211014.1.S1_x_atpmrna21641hypothetical protein-1e-1At1g08650PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)O.I.H.G.S.X.
0.3357.50.94Ptp.7258.1.A1_atCV254493hypothetical protein-1e-10At3g20830protein kinase family proteinO.I.H.G.S.X.
0.3357.50.95PtpAffx.151368.1.S1_atBU832252--9e-2At4g29520-O.I.H.G.S.X.
0.3357.50.97Ptp.7634.1.S1_atDN488365--1e-32At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)O.I.H.G.S.X.
0.3255.20.92PtpAffx.50042.1.A1_atCV261321hypothetical protein-1e-4At3g54720AMP1 (ALTERED MERISTEM PROGRAM 1)O.I.H.G.S.X.
0.3255.20.94PtpAffx.162571.1.A1_atCV253632--3e-12At4g14465DNA-binding protein-relatedO.I.H.G.S.X.
0.3153.70.95Ptp.3562.1.S1_atCK111885--4e-1At2g33793unknown proteinO.I.H.G.S.X.
0.3052.00.92PtpAffx.208451.1.S1_atpmrna16790hypothetical protein-2e-9At3g05640protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2950.50.92PtpAffx.77375.1.S1_atCV276202hypothetical protein-2e+0At1g70310SPDS2 (spermidine synthase 2)O.I.H.G.S.X.
0.2950.50.93PtpAffx.35493.1.S1_atDN488263--5e-7At3g14362RTFL10 (ROTUNDIFOLIA LIKE 10)O.I.H.G.S.X.
0.2950.50.94PtpAffx.203104.1.S1_atpmrna6145hypothetical protein-4e-35At3g03050CSLD3 (CELLULOSE SYNTHASE-LIKE D3)O.I.H.G.S.X.
0.2747.10.94Ptp.5504.1.S1_atCK099753auxin efflux carrier component-6e-12At1g73590PIN1 (PIN-FORMED 1)O.I.H.G.S.X.
0.2747.10.95PtpAffx.9718.1.S1_atBU886551hypothetical protein-2e+0At2g19980allergen V5/Tpx-1-related family proteinO.I.H.G.S.X.
0.2747.10.95Ptp.886.1.S1_atBU831513hypothetical protein-1e-26At5g55530C2 domain-containing proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.249.217.S1_atCK096335--2e-7At2g31410unknown proteinO.I.H.G.S.X.
0.2645.20.92PtpAffx.211014.1.S1_atpmrna21641hypothetical protein-1e-1At1g08650PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)O.I.H.G.S.X.
0.2645.20.92Ptp.2974.1.S1_atBU885840laccase 110a-3e+0At5g63634unknown proteinO.I.H.G.S.X.
0.2645.20.93PtpAffx.202068.1.S1_atpmrna4128hypothetical protein-4e-11At2g26560PLA2A (PHOSPHOLIPASE A 2A)O.I.H.G.S.X.
0.2543.60.91PtpAffx.204420.1.S1_atpmrna8690hypothetical protein-1e-2At1g74470geranylgeranyl reductaseO.I.H.G.S.X.
0.2543.60.94PtpAffx.105150.1.S1_atDN489996hypothetical protein-2e+0At4g00950MEE47 (maternal effect embryo arrest 47)O.I.H.G.S.X.
0.2543.60.96Ptp.6618.1.S1_s_atCK320243hypothetical protein-5e-13At4g24220VEP1 (VEIN PATTERNING 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.293.5GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.193.2GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.791.8GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.389.8GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage