Co-expression analysis

Gene ID	PtpAffx.72354.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g14104: unknown protein (HF=3e+0)
Module size	7 genes
NF	0.56
%ile	86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.96	PtpAffx.72354.1.S1_at	BU889551	hypothetical protein	-	3e+0	At4g14104	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.96	PtpAffx.15088.1.S1_at	CF936886	hypothetical protein	-	7e-3	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.96	Ptp.7446.1.S1_at	BU814736	hypothetical protein	-	2e+0	At3g21710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	Ptp.3640.1.S1_at	BU895250	hypothetical protein	-	7e-2	At4g09890	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	PtpAffx.149893.1.S1_s_at	DN486606	hypothetical protein	-	1e-8	At3g12950	catalytic	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.157405.1.S1_at	CF233029	hypothetical protein	-	2e-2	At4g09467	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	Ptp.5711.1.S1_at	AJ849329.1	auxin efflux carrier component	-	2e-7	At1g73590	PIN1 (PIN-FORMED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the barley gene, HS17I13u_s_at, orthologous to the query gene, PtpAffx.72354.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HS17I13u_s_at	At4g14104	-	-	7e-1	At1g42480	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig6921_s_at	At4g14104	-	-	7e-22	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.60	77.3	EBem10_SQ004_B20_s_at	At4g14104	-	-	5e+0	At4g30290	XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)	O.I.	H.G.	S.X.	Please select
0.43	56.4	rbasd18a22_s_at	At4g14104	-	-	3e-3	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig10380_x_at	At4g14104	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig19387_at	At4g14104	-	-	2e-1	At3g30580	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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