CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.72354.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g14104: unknown protein (HF=3e+0)

Module size 7 genes

NF 0.56

%ile 86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 83.9 0.96 PtpAffx.72354.1.S1_at BU889551 hypothetical protein - 3e+0 At4g14104 unknown protein O.I. H.G. S.X.
0.77 94.9 0.96 PtpAffx.15088.1.S1_at CF936886 hypothetical protein - 7e-3 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) O.I. H.G. S.X.
0.71 92.6 0.96 Ptp.7446.1.S1_at BU814736 hypothetical protein - 2e+0 At3g21710 unknown protein O.I. H.G. S.X.
0.61 87.0 0.96 Ptp.3640.1.S1_at BU895250 hypothetical protein - 7e-2 At4g09890 unknown protein O.I. H.G. S.X.
0.53 80.5 0.96 PtpAffx.149893.1.S1_s_at DN486606 hypothetical protein - 1e-8 At3g12950 catalytic O.I. H.G. S.X.
0.40 67.0 0.96 PtpAffx.157405.1.S1_at CF233029 hypothetical protein - 2e-2 At4g09467 - O.I. H.G. S.X.
0.29 50.5 0.96 Ptp.5711.1.S1_at AJ849329.1 auxin efflux carrier component - 2e-7 At1g73590 PIN1 (PIN-FORMED 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 93.5 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.21245.1.S1_at, orthologous to the query gene, PtpAffx.72354.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 HgAffx.21245.1.S1_at At4g14104 - - 3e+0 At5g43550 - O.I. H.G. S.X.
0.57 78.8 PsAffx.C122000010_at At4g14104 - - 6e-1 At4g16240 unknown protein O.I. H.G. S.X.
0.11 14.2 HgAffx.17965.1.S1_at At4g14104 - - 2e+0 At2g23340 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.07 10.2 HgAffx.19033.4.A1_at At4g14104 - - 6e-2 At1g54410 dehydrin family protein O.I. H.G. S.X.
0.05 8.0 GmaAffx.89861.1.S1_s_at At4g14104 Ubiquitin - 3e-127 At4g05320 UBQ10 (POLYUBIQUITIN 10) O.I. H.G. S.X.
0.04 7.0 Gma.2534.1.S1_s_at At4g14104 Ubiquitin - 2e-140 At4g05320 UBQ10 (POLYUBIQUITIN 10) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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