Co-expression analysis

Gene ID PtpAffx.7228.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to Atmg00990: - (HF=7e+0)
Module size 6 genes
NF 0.58
%ile 88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95PtpAffx.7228.1.A1_atBP933598hypothetical protein-7e+0Atmg00990-O.I.H.G.S.X.
0.5380.50.93PtpAffx.148817.1.S1_atBI125776hypothetical protein-3e-2At4g15920-O.I.H.G.S.X.
0.4471.90.95PtpAffx.70120.1.A1_atCV271262ethylene-insensitive 3c /// ethylene-insensitive 3d-5e-1At3g52300ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)O.I.H.G.S.X.
0.4471.90.95Ptp.5162.1.S1_s_atCF936341hypothetical protein-7e-10At2g29290tropinone reductase, putative / tropine dehydrogenase, putativeO.I.H.G.S.X.
0.4471.90.95Ptp.5101.1.S1_s_atCV237236hypothetical protein-3e+0At4g38490unknown proteinO.I.H.G.S.X.
0.4067.00.93Ptp.6000.1.S1_atCV277868hypothetical protein-4e-1At4g15545unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.096.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.096.6GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.395.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.092.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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