Co-expression analysis

Gene ID PtpAffx.7169.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g46530: ARF11 (AUXIN RESPONSE FACTOR 11) (HF=9e-5)
Module size 7 genes
NF 0.55
%ile 86.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.94PtpAffx.7169.1.A1_atCV237696hypothetical protein-9e-5At2g46530ARF11 (AUXIN RESPONSE FACTOR 11)O.I.H.G.S.X.
0.7393.60.94PtpAffx.204704.1.S1_atpmrna9266hypothetical protein-2e-15At4g34260FUC95AO.I.H.G.S.X.
0.7393.60.95PtpAffx.159782.1.A1_atCV259240--5e+0At4g25590ADF7 (actin depolymerizing factor 7)O.I.H.G.S.X.
0.6086.00.96PtpAffx.1567.1.A1_a_atCV243399hypothetical protein-5e-7At2g47210myb family transcription factorO.I.H.G.S.X.
0.4067.00.96Ptp.5630.1.S1_atCV239014hypothetical protein-9e-12At4g26630-O.I.H.G.S.X.
0.3559.70.94PtpAffx.119949.1.S1_atCV248924methyl binding domain protein-8e+0Atmg00980-O.I.H.G.S.X.
0.3357.50.96PtpAffx.129554.1.A1_atBU876914hypothetical protein-6e+0At5g37910seven in absentia (SINA) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.697.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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