Co-expression analysis

Gene ID	PtpAffx.71501.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g29880: glycyl-tRNA synthetase / glycine--tRNA ligase (HF=4e-84)
Module size	6 genes
NF	0.35
%ile	61.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.96	PtpAffx.71501.1.S1_at	CK092072	hypothetical protein	-	4e-84	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.208943.1.S1_s_at	pmrna17719	hypothetical protein	-	2e-51	At1g25350	OVA9 (ovule abortion 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.113361.1.S1_at	CX185369	hypothetical protein	-	1e-25	At2g40760	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.67551.1.S1_at	CA931635	hypothetical protein	-	3e-69	At5g65010	ASN2 (ASPARAGINE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.158358.1.S1_at	CX186762	hypothetical protein	-	2e-5	At4g38170	FRS9 (FAR1-related sequence 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	PtpAffx.133247.1.S1_at	AI164131	-	-	5e+0	At5g19100	extracellular dermal glycoprotein-related / EDGP-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	91.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage