Co-expression analysis

Gene ID PtpAffx.71189.3.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g28310: unknown protein (HF=2e-46)
Module size 7 genes
NF 0.21
%ile 38.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.96PtpAffx.71189.3.S1_s_atCV276271hypothetical protein-2e-46At2g28310unknown proteinO.I.H.G.S.X.
0.6086.00.96PtpAffx.38601.1.A1_atCK318400hypothetical protein-3e-7At3g50500SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)O.I.H.G.S.X.
0.5582.20.95PtpAffx.151904.1.A1_atBP934640hypothetical protein-1e+0At1g54150zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5582.20.96PtpAffx.205333.1.S1_atpmrna10561hypothetical protein-3e-107At3g50500SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)O.I.H.G.S.X.
0.2441.80.95PtpAffx.151163.1.S1_atCX173673hypothetical protein-6e-15At2g28930APK1BO.I.H.G.S.X.
0.1729.10.94PtpAffx.64943.1.S1_s_atBI136037hypothetical protein-6e-8At4g09150T-complex protein 11O.I.H.G.S.X.
0.058.30.94PtpAffx.62918.1.A1_a_atCV239158--8e-15At5g27380GSH2 (GLUTATHIONE SYNTHETASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.193.2GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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