Co-expression analysis

Gene ID	PtpAffx.71189.1.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g08040: unknown protein (HF=1e-32)
Module size	14 genes
NF	0.10
%ile	21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	88.6	0.87	PtpAffx.71189.1.A1_a_at	CV277875	hypothetical protein	-	1e-32	At1g08040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	PtpAffx.52716.2.A1_s_at	CV260868	hypothetical protein	-	2e-40	At5g17380	pyruvate decarboxylase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.88	PtpAffx.49159.1.A1_at	CX180149	-	-	5e+0	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	PtpAffx.202668.1.S1_at	pmrna5323	hypothetical protein	-	5e+0	At5g01580	OSH1 (OAS HIGH ACCUMULATION 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.162745.1.S1_at	BU827623	hypothetical protein	-	1e-53	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.153346.1.A1_at	CV261030	-	-	4e+0	At5g50200	WR3 (WOUND-RESPONSIVE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.91	Ptp.399.1.A1_at	CK088846	hypothetical protein	-	3e-8	At3g61160	shaggy-related protein kinase beta / ASK-beta (ASK2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.161323.1.S1_a_at	CX186124	hypothetical protein	-	1e-53	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.91	PtpAffx.24402.1.S1_at	CV261093	hypothetical protein	-	2e-5	At3g10360	APUM4 (Arabidopsis Pumilio 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.92	Ptp.597.1.A1_s_at	CK089167	hypothetical protein	-	1e-31	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.93	PtpAffx.24297.1.S1_at	CV265424	hypothetical protein	-	3e-2	At2g27460	sec23/sec24 transport family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.91	PtpAffx.161194.1.S1_at	CN549561	hypothetical protein	-	5e-13	At4g25360	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.88	PtpAffx.204893.1.S1_at	pmrna9664	hypothetical protein	-	8e-20	At5g12430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.90	PtpAffx.10648.1.S1_s_at	CN519395	hypothetical protein	-	8e-74	At3g05580	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	92.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage