Co-expression analysis

Gene ID	PtpAffx.7093.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g17600: LIL3:1 (HF=1e+0)
Module size	6 genes
NF	0.03
%ile	7.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.89	PtpAffx.7093.1.A1_at	CK091450	-	-	1e+0	At4g17600	LIL3:1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.89	PtpAffx.98801.1.S1_at	CV249157	hypothetical protein	-	6e-3	At1g63310	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	Ptp.4029.1.S1_s_at	BU861407	hypothetical protein	-	3e-18	At4g01900	GLB1 (GLNB1 HOMOLOG)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.91	PtpAffx.160252.2.A1_at	CV269236	-	-	8e-6	At4g26640	WRKY20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.90	Ptp.400.1.A1_a_at	CK088856	-	-	1e-2	At2g37780	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.89	PtpAffx.112661.1.A1_at	DN488643	hypothetical protein	-	5e+0	At2g44470	BGLU29 (BETA GLUCOSIDASE 29)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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