Co-expression analysis

Gene ID PtpAffx.70456.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g58600: - (HF=2e+0)
Module size 6 genes
NF 0.34
%ile 58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.93PtpAffx.70456.1.A1_atCK090706hypothetical protein-2e+0At3g58600-O.I.H.G.S.X.
0.5380.50.91PtpAffx.213720.1.S1_atpmrna26774hypothetical protein-9e-9At3g51610unknown proteinO.I.H.G.S.X.
0.4268.60.92PtpAffx.87019.1.A1_atBP935009hypothetical protein-9e-14At5g19390pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing proteinO.I.H.G.S.X.
0.3661.60.93PtpAffx.61388.1.A1_atBP935694hypothetical protein-1e+0At5g02770unknown proteinO.I.H.G.S.X.
0.2340.50.92PtpAffx.88515.1.A1_atCV263318--8e-1At5g18310unknown proteinO.I.H.G.S.X.
0.1525.30.91PtpAffx.20182.2.S1_atCV261841--6e-3At3g06660PAPA-1-like family protein / zinc finger (HIT type) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.193.2GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.590.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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