Co-expression analysis

Gene ID	PtpAffx.69725.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g41130: basic helix-loop-helix (bHLH) family protein (HF=1e+0)
Module size	6 genes
NF	0.65
%ile	93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.91	PtpAffx.69725.1.S1_a_at	DN494612	hypothetical protein	-	1e+0	At2g41130	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.92	PtpAffx.2103.1.A1_s_at	CV246207	hypothetical protein	-	3e-8	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.92	PtpAffx.30128.1.S1_at	CV244941	hypothetical protein	-	3e+0	At2g23910	cinnamoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.92	PtpAffx.265.1.A1_at	CV261776	hypothetical protein	-	3e-89	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.91	PtpAffx.206254.1.S1_at	pmrna12413	hypothetical protein	-	1e-1	At2g07280	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.210959.1.S1_x_at	pmrna21534	hypothetical protein	-	8e-23	At1g54570	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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