Co-expression analysis

Gene ID	PtpAffx.69478.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g52160: KCS15 (3-KETOACYL-COA SYNTHASE 15) (HF=9e-1)
Module size	6 genes
NF	0.60
%ile	90.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.94	PtpAffx.69478.1.A1_at	CX184444	hypothetical protein	-	9e-1	At3g52160	KCS15 (3-KETOACYL-COA SYNTHASE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.93	PtpAffx.11427.1.A1_at	CV266061	hypothetical protein	-	4e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.92	PtpAffx.43484.1.A1_at	CV269425	hypothetical protein	-	2e+0	At1g50340	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.213551.1.S1_x_at	pmrna26482	hypothetical protein	-	2e-22	At3g02560	40S ribosomal protein S7 (RPS7B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.200204.1.S1_at	pmrna386	hypothetical protein	-	3e-130	At3g23940	dehydratase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	Ptp.5678.1.S1_a_at	CV248054	hypothetical protein	-	2e+0	Atmg00840	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage