Co-expression analysis

Gene ID	PtpAffx.692.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g23950: C2 domain-containing protein (HF=1e-1)
Module size	6 genes
NF	0.55
%ile	85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.96	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	PtpAffx.17886.2.S1_s_at	CX183909	hypothetical protein	-	9e-2	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	Ptp.5801.2.S1_a_at	BU836809	hypothetical protein	-	2e+0	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.113369.1.S1_at	CX185014	NAC domain protein, IPR003441	-	5e-26	At1g33060	no apical meristem (NAM) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.212106.1.S1_at	pmrna23742	calcium dependent protein kinase 12	-	5e-33	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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