Co-expression analysis

Gene ID	PtpAffx.69014.1.A1_at
Gene name	histone 2
Homology with Arabidopsis	Similar to At1g52740: HTA9 (HISTONE H2A PROTEIN 9) (HF=5e-3)
Module size	18 genes
NF	0.21
%ile	39.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	88.6	0.84	PtpAffx.69014.1.A1_at	CV273971	histone 2	-	5e-3	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.89	PtpAffx.5181.1.A1_at	CV258361	-	-	1e-1	At5g48515	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.89	PtpAffx.220044.1.S1_at	pmrna36313	hypothetical protein	-	5e-1	At5g50335	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.90	PtpAffx.203574.1.S1_s_at	pmrna7102	hypothetical protein	-	2e-3	At1g67030	ZFP6 (ZINC FINGER PROTEIN 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.89	PtpAffx.202840.1.S1_at	pmrna5626	hypothetical protein	-	4e+0	At5g20020	RAN2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.88	PtpAffx.216863.1.S1_at	pmrna31905	hypothetical protein	-	4e+0	At5g36659	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.91	PtpAffx.214875.1.S1_at	pmrna28785	hypothetical protein	-	7e-1	At5g44560	VPS2.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.89	PtpAffx.77844.1.S1_at	CK091536	-	-	9e+0	At5g05113	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.85	Ptp.373.1.A1_at	CK088690	hypothetical protein	-	4e-1	At2g28470	BGAL8 (beta-galactosidase 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.89	PtpAffx.140892.2.A1_a_at	CV241766	-	-	3e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.90	Ptp.2282.3.A1_at	CV238349	-	-	2e-4	At1g30910	molybdenum cofactor sulfurase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.217578.1.S1_at	pmrna32904	hypothetical protein	-	7e-3	At1g52540	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.218450.1.S1_s_at	pmrna34072	hypothetical protein	-	6e+0	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.89	PtpAffx.88299.1.A1_at	CV273016	-	-	6e+0	At3g11810	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.89	PtpAffx.15423.1.A1_at	CK094814	sodium proton exchanger	-	3e-1	At3g48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.87	PtpAffx.210677.1.S1_at	pmrna20937	hypothetical protein	-	8e-2	At5g50790	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.89	PtpAffx.220532.1.S1_at	pmrna36936	hypothetical protein	-	4e-1	At4g00310	EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.87	PtpAffx.211765.1.S1_at	pmrna23072	-	-	2e-3	At1g02910	LPA1 (LOW PSII ACCUMULATION1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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