Co-expression analysis

Gene ID	PtpAffx.675.5.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g27490: integral membrane Yip1 family protein (HF=4e-45)
Module size	8 genes
NF	0.48
%ile	77.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	91.7	0.96	PtpAffx.675.5.S1_at	CF227425	hypothetical protein	-	4e-45	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	Ptp.1847.1.A1_s_at	CK093485	hypothetical protein	-	7e-17	At2g23070	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.97	Ptp.5102.1.A1_at	CV267337	hypothetical protein	-	1e-88	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	Ptp.5102.1.A1_x_at	CV267337	hypothetical protein	-	1e-88	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.98	Ptp.799.1.S1_s_at	CV271292	hypothetical protein	-	3e-82	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	Ptp.5095.2.S1_a_at	CF235242	hypothetical protein	-	2e-83	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	Ptp.2168.1.S1_at	CA927090	-	-	2e-9	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	PtpAffx.17561.1.A1_s_at	CF235338	hypothetical protein	-	6e-50	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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