Co-expression analysis

Gene ID	PtpAffx.67478.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g35090: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.17
%ile	32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.81	PtpAffx.67478.1.S1_at	BU893248	-	-	2e+0	At2g35090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.82	PtpAffx.221666.1.S1_at	pmrna38666	hypothetical protein	-	2e+0	At3g49890	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.81	PtpAffx.204169.1.S1_at	pmrna8215	hypothetical protein	-	2e-1	Atcg00130	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.81	PtpAffx.99531.1.S1_at	DN500762	-	-	2e+0	At4g36110	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.80	PtpAffx.217836.1.S1_at	pmrna33259	hypothetical protein	-	2e+0	At2g30680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.80	PtpAffx.220172.1.S1_at	pmrna36526	-	-	2e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.0	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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