Co-expression analysis

Gene ID	PtpAffx.66898.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g58510: unknown protein (HF=2e-15)
Module size	18 genes
NF	0.45
%ile	74.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	92.7	0.93	PtpAffx.66898.1.S1_at	CK101820	hypothetical protein	-	2e-15	At5g58510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.95	PtpAffx.152100.1.S1_at	CK318604	hypothetical protein	-	1e-10	At3g49350	RAB GTPase activator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.96	Ptp.7382.1.S1_at	CX176453	-	-	1e-121	At2g42500	PP2A-4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	PtpAffx.130633.1.S1_at	DN501902	hypothetical protein	-	6e+0	At4g16070	lipase class 3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.95	PtpAffx.99407.1.S1_at	CN520990	hypothetical protein	-	4e-56	At5g53850	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.96	PtpAffx.158805.1.S1_at	BU869437	hypothetical protein	-	5e-25	At4g25970	PSD3 (phosphatidylserine decarboxylase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.95	PtpAffx.213102.1.S1_s_at	pmrna25639	hypothetical protein	-	3e-60	At1g63700	YDA (YODA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.95	PtpAffx.108604.1.A1_at	CV233919	hypothetical protein	-	9e-18	At5g15170	tyrosyl-DNA phosphodiesterase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.135361.1.S1_s_at	CN519617	hypothetical protein	-	3e-8	At5g16270	SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	PtpAffx.126848.1.A1_s_at	CV283487	hypothetical protein	-	9e-24	At5g67530	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.95	PtpAffx.201214.1.S1_at	pmrna2409	hypothetical protein	-	2e-55	At2g14260	PIP	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.159110.1.S1_at	CX170606	hypothetical protein	-	2e-30	At1g04140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.224818.1.S1_at	pmrna43685	hypothetical protein	-	7e-52	At1g63700	YDA (YODA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	Ptp.4771.1.S1_at	BU893475	hypothetical protein	-	1e-10	At4g19670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.53090.1.S1_at	CK096004	hypothetical protein	-	7e-32	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.119547.1.S1_s_at	BP928546	hypothetical protein	-	1e-89	At2g42500	PP2A-4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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