Co-expression analysis

Gene ID	PtpAffx.66799.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g34050: - (HF=1e+0)
Module size	8 genes
NF	0.16
%ile	31.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.84	PtpAffx.66799.1.S1_at	DN495381	-	-	1e+0	At2g34050	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.84	Ptp.2732.1.S1_at	DN502621	hypothetical protein	-	2e-5	At4g21980	APG8A (AUTOPHAGY 8A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.86	PtpAffx.214808.1.S1_at	pmrna28664	hypothetical protein	-	1e-10	At5g53930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.85	PtpAffx.213064.1.S1_at	pmrna25566	hypothetical protein	-	5e+0	At5g15240	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.86	PtpAffx.209187.1.S1_at	pmrna18177	hypothetical protein	-	6e-8	At4g39830	L-ascorbate oxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.87	Ptp.701.1.A1_at	CK087763	hypothetical protein	-	2e-15	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.84	PtpAffx.217816.1.S1_s_at	pmrna33230	hypothetical protein	-	3e-3	At5g50700	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.85	PtpAffx.216869.1.S1_at	pmrna31914	hypothetical protein	-	1e+1	At2g33830	dormancy/auxin associated family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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