Co-expression analysis

Gene ID	PtpAffx.66655.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g45940: atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) (HF=3e-2)
Module size	7 genes
NF	0.12
%ile	24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.91	PtpAffx.66655.1.S1_at	CK107251	-	-	3e-2	At5g45940	atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.91	PtpAffx.215767.1.S1_at	pmrna30147	hypothetical protein	-	5e+0	At3g45525	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.49569.1.A1_at	CV279998	hypothetical protein	-	2e-5	At1g26090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.91	Ptp.2047.2.A1_at	DN484352	hypothetical protein	-	8e+0	At3g60020	ASK5 (ARABIDOPSIS SKP1-LIKE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.91	Ptp.1210.1.A1_at	CK090183	hypothetical protein	-	3e-1	At1g36272	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.91	PtpAffx.224879.1.S1_x_at	pmrna43783	hypothetical protein	-	5e-65	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.91	Ptp.1937.1.A1_s_at	CK093324	-	-	4e+0	At4g17980	anac071 (Arabidopsis NAC domain containing protein 71)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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