Co-expression analysis

Gene ID	PtpAffx.65236.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g19630: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.41
%ile	69.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.94	PtpAffx.65236.1.A1_at	CK087944	hypothetical protein	-	2e-1	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.108294.1.A1_at	CV245961	ethylene-insensitive 3f	-	8e+0	At5g36722	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.134238.1.A1_at	CV242930	hypothetical protein	-	3e-3	At2g47350	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.7538.1.S1_at	DN492313	hypothetical protein	-	8e-13	At2g44090	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	PtpAffx.18689.1.A1_a_at	CV237087	hypothetical protein	-	2e-28	At3g11200	AL2 (ALFIN-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.96	Ptp.3625.1.A1_at	CV267089	hypothetical protein	-	2e-12	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.113464.1.S1_s_at, orthologous to the query gene, PtpAffx.65236.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	TaAffx.113464.1.S1_s_at	At5g19630	-	-	2e-1	At2g33400	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.27912.2.S1_at	At5g19630	-	-	7e-5	At5g60760	2-phosphoglycerate kinase-related	O.I.	H.G.	S.X.	Please select
0.63	83.1	TaAffx.92763.1.S1_at	At5g19630	-	-	4e+0	At2g22425	peptidase	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.5778.1.A1_at	At5g19630	-	-	5e+0	At3g11580	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.346.2.S1_at	At5g19630	-	-	1e+0	At2g04430	atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.18237.1.S1_at	At5g19630	-	-	5e-10	At1g17940	-	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.4507.1.S1_at	At5g19630	-	-	4e-1	At5g52740	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	79.8	TaAffx.121914.3.S1_at	At5g19630	-	-	1e+0	At5g42510	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	Ta.25880.1.A1_at	At5g19630	-	-	4e+0	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.15103.1.S1_at	At5g19630	-	-	6e-1	At4g25140	OLEO1 (OLEOSIN 1)	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.9146.2.S1_a_at	At5g19630	-	-	1e-11	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select
0.55	76.8	TaAffx.86839.1.S1_at	At5g19630	-	-	2e-1	At1g72680	cinnamyl-alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.27912.1.A1_at	At5g19630	-	-	2e-7	At3g45090	2-phosphoglycerate kinase-related	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.42795.1.A1_at	At5g19630	-	-	4e+0	At5g42405	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.118972.1.S1_at	At5g19630	-	-	5e+0	At5g26230	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.14149.1.S1_at	At5g19630	fatty acyl coA reductase	-	1e+0	At4g33790	CER4 (ECERIFERUM 4)	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.105915.1.S1_at	At5g19630	-	-	1e+0	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.4650.2.S1_at	At5g19630	-	-	6e+0	At4g16450	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.30590.1.A1_at	At5g19630	-	-	2e+0	At4g15460	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.5778.3.S1_at	At5g19630	-	-	8e-1	At3g50250	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.78516.1.S1_at	At5g19630	-	-	3e+0	At3g07870	F-box family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.3300.1.S1_at	At5g19630	-	-	6e+0	At3g27906	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.9146.2.S1_at	At5g19630	-	-	1e-11	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.3046.2.S1_x_at	At5g19630	-	-	4e-3	At1g69840	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.137562.1.S1_s_at	At5g19630	-	-	3e-1	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.11558.1.S1_at	At5g19630	-	-	1e+0	At1g25250	AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.87051.1.S1_at	At5g19630	-	-	4e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.10320.1.S1_at	At5g19630	-	-	4e+0	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.4660.1.S1_at	At5g19630	-	-	1e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.9146.1.A1_at	At5g19630	-	-	2e+0	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.3305.3.S1_at	At5g19630	-	-	2e-8	At5g62670	AHA11 (Arabidopsis H(+)-ATPase 11)	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.51079.1.S1_at	At5g19630	-	-	3e-1	At1g18630	GR-RBP6 (glycine-rich RNA-binding protein 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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