CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.65236.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g19630: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.41

%ile 69.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 0.94 PtpAffx.65236.1.A1_at CK087944 hypothetical protein - 2e-1 At5g19630 unknown protein O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.108294.1.A1_at CV245961 ethylene-insensitive 3f - 8e+0 At5g36722 unknown protein O.I. H.G. S.X.
0.44 71.9 0.95 PtpAffx.134238.1.A1_at CV242930 hypothetical protein - 3e-3 At2g47350 PAPA-1-like family protein / zinc finger (HIT type) family protein O.I. H.G. S.X.
0.44 71.9 0.96 Ptp.7538.1.S1_at DN492313 hypothetical protein - 8e-13 At2g44090 - O.I. H.G. S.X.
0.43 69.7 0.96 PtpAffx.18689.1.A1_a_at CV237087 hypothetical protein - 2e-28 At3g11200 AL2 (ALFIN-LIKE 2) O.I. H.G. S.X.
0.13 21.6 0.96 Ptp.3625.1.A1_at CV267089 hypothetical protein - 2e-12 At3g07560 PEX13 (PEROXIN 13) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.4 97.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1 93.2 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os11g0198900, orthologous to the query gene, PtpAffx.65236.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os11g0198900 At5g19630 - Hypothetical protein 6e+0 At5g38800 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) O.I. H.G. S.X.
0.60 79.7 Os03g0426400 At5g19630 - - 6e-2 At4g05140 equilibrative nucleoside transporter family protein O.I. H.G. S.X.
0.53 71.3 Os08g0500600 At5g19630 - PPR repeat containing protein 4e-6 At1g14470 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.53 71.3 Os07g0132100 At5g19630 - Protein kinase family protein 7e-2 At1g70130 lectin protein kinase, putative O.I. H.G. S.X.
0.46 60.9 Os08g0527500 At5g19630 - - 4e+0 At2g35215 unknown protein O.I. H.G. S.X.
0.44 58.1 Os07g0550300 At5g19630 - Cyclin-like F-box domain containing protein 3e+0 At4g11870 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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