Co-expression analysis

Gene ID	PtpAffx.65236.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g19630: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.41
%ile	69.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.94	PtpAffx.65236.1.A1_at	CK087944	hypothetical protein	-	2e-1	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.108294.1.A1_at	CV245961	ethylene-insensitive 3f	-	8e+0	At5g36722	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.134238.1.A1_at	CV242930	hypothetical protein	-	3e-3	At2g47350	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.7538.1.S1_at	DN492313	hypothetical protein	-	8e-13	At2g44090	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	PtpAffx.18689.1.A1_a_at	CV237087	hypothetical protein	-	2e-28	At3g11200	AL2 (ALFIN-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.96	Ptp.3625.1.A1_at	CV267089	hypothetical protein	-	2e-12	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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