CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.6482.1.S1_at

Gene name predicted membrane protein
Homology with Arabidopsis Similar to At5g36290: unknown protein (HF=4e-82)

Module size 31 genes

NF 0.17

%ile 32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.90 97.9 0.89 PtpAffx.6482.1.S1_at CV260043 predicted membrane protein - 4e-82 At5g36290 unknown protein O.I. H.G. S.X.
0.31 53.7 0.91 PtpAffx.31246.1.S1_at CF120135 hypothetical protein - 1e+0 At3g61640 AGP20 O.I. H.G. S.X.
0.28 50.5 0.93 PtpAffx.249.318.A1_s_at CV130443 hypothetical protein - 9e-15 At2g35690 ACX5 (ACYL-COA OXIDASE 5) O.I. H.G. S.X.
0.25 43.6 0.91 PtpAffx.104546.1.S1_at CV250441 potassium efflux antiporter - 9e-43 At5g51710 KEA5 O.I. H.G. S.X.
0.23 40.5 0.91 PtpAffx.20885.1.S1_a_at BI125338 hypothetical protein - 9e-3 At3g47300 SELT (SELT-LIKE PROTEIN PRECURSOR) O.I. H.G. S.X.
0.23 40.5 0.92 PtpAffx.76483.1.A1_s_at CK113344 hypothetical protein - 8e-24 At4g04910 NSF (N-ethylmaleimide sensitive factor) O.I. H.G. S.X.
0.22 38.3 0.91 Ptp.654.1.S1_at CX174493 hypothetical protein - 5e-7 At4g37830 cytochrome c oxidase-related O.I. H.G. S.X.
0.20 34.6 0.93 PtpAffx.16094.1.S1_at CX657826 hypothetical protein - 6e-13 At1g15350 unknown protein O.I. H.G. S.X.
0.20 34.6 0.93 PtpAffx.88257.1.S1_at CV274540 hypothetical protein - 6e-3 At3g56640 exocyst complex subunit Sec15-like family protein O.I. H.G. S.X.
0.20 34.6 0.93 PtpAffx.208454.1.S1_at pmrna16794 hypothetical protein - 3e-1 At3g05920 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.20 34.6 0.92 PtpAffx.5430.2.S1_at CN520438 hypothetical protein - 4e-4 At5g47090 unknown protein O.I. H.G. S.X.
0.20 34.6 0.93 Ptp.314.1.A1_at BU873794 hypothetical protein - 2e-24 At5g57300 UbiE/COQ5 methyltransferase family protein O.I. H.G. S.X.
0.19 32.7 0.92 PtpAffx.80063.3.A1_s_at DN492066 hypothetical protein - 4e-10 At5g48630 cyclin family protein O.I. H.G. S.X.
0.18 30.8 0.93 PtpAffx.1192.1.A1_at CV276864 hypothetical protein - 6e-10 At1g51350 armadillo/beta-catenin repeat family protein O.I. H.G. S.X.
0.18 30.8 0.94 PtpAffx.131235.1.S1_s_at CK116485 hypothetical protein - 8e-6 At5g11710 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related O.I. H.G. S.X.
0.17 29.1 0.93 PtpAffx.52166.1.A1_at CV268523 hypothetical protein - 5e+0 At5g46115 unknown protein O.I. H.G. S.X.
0.17 29.1 0.91 Ptp.2697.1.S1_at CK092312 hypothetical protein - 1e-91 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.15 25.3 0.92 PtpAffx.97165.1.A1_at CV243827 - - 1e-1 At5g13340 unknown protein O.I. H.G. S.X.
0.15 25.3 0.93 Ptp.1416.1.A1_s_at CV247793 hypothetical protein - 2e-34 At5g48580 FKBP15-2 O.I. H.G. S.X.
0.14 23.5 0.93 PtpAffx.110877.1.S1_s_at CK318006 hypothetical protein - 1e+0 Atmg01300 - O.I. H.G. S.X.
0.14 23.5 0.92 PtpAffx.5890.2.S1_a_at CF232083 hypothetical protein - 5e-3 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.14 23.5 0.95 Ptp.5357.1.S1_at CV237205 hypothetical protein - 5e-69 At4g17530 ATRAB1C O.I. H.G. S.X.
0.12 19.6 0.95 Ptp.4866.1.S1_at CK111784 - - 9e-105 At5g44240 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.12 19.6 0.93 Ptp.4216.1.S1_at CV256909 glycosyl transferase - 3e-45 At1g27600 glycosyl transferase family 43 protein O.I. H.G. S.X.
0.12 19.6 0.93 PtpAffx.141227.1.A1_s_at CV272556 hypothetical protein - 6e-19 At5g48520 unknown protein O.I. H.G. S.X.
0.12 19.6 0.92 PtpAffx.50507.1.A1_s_at CV247777 - - 2e-18 At5g55290 ATP synthase subunit H family protein O.I. H.G. S.X.
0.11 18.1 0.94 Ptp.2558.1.S1_at CK096344 hypothetical protein - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.11 18.1 0.92 PtpAffx.44916.2.A1_at CV241345 hypothetical protein - 5e-13 At1g09020 SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) O.I. H.G. S.X.
0.10 16.3 0.92 PtpAffx.123845.1.S1_s_at AI161661 hypothetical protein - 2e-21 At4g02500 XT2 (UDP-XYLOSYLTRANSFERASE 2) O.I. H.G. S.X.
0.08 12.9 0.94 PtpAffx.139993.1.A1_at CV282460 hypothetical protein - 7e-3 At3g19420 ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) O.I. H.G. S.X.
0.07 11.6 0.91 Ptp.273.1.S1_x_at CK087938 hypothetical protein - 2e-24 At3g42050 vacuolar ATP synthase subunit H family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.90	97.9	0.89	PtpAffx.6482.1.S1_at	CV260043	predicted membrane protein	-	4e-82	At5g36290	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.91	PtpAffx.31246.1.S1_at	CF120135	hypothetical protein	-	1e+0	At3g61640	AGP20	O.I.	H.G.	S.X.
0.28	50.5	0.93	PtpAffx.249.318.A1_s_at	CV130443	hypothetical protein	-	9e-15	At2g35690	ACX5 (ACYL-COA OXIDASE 5)	O.I.	H.G.	S.X.
0.25	43.6	0.91	PtpAffx.104546.1.S1_at	CV250441	potassium efflux antiporter	-	9e-43	At5g51710	KEA5	O.I.	H.G.	S.X.
0.23	40.5	0.91	PtpAffx.20885.1.S1_a_at	BI125338	hypothetical protein	-	9e-3	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.
0.23	40.5	0.92	PtpAffx.76483.1.A1_s_at	CK113344	hypothetical protein	-	8e-24	At4g04910	NSF (N-ethylmaleimide sensitive factor)	O.I.	H.G.	S.X.
0.22	38.3	0.91	Ptp.654.1.S1_at	CX174493	hypothetical protein	-	5e-7	At4g37830	cytochrome c oxidase-related	O.I.	H.G.	S.X.
0.20	34.6	0.93	PtpAffx.16094.1.S1_at	CX657826	hypothetical protein	-	6e-13	At1g15350	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	0.93	PtpAffx.88257.1.S1_at	CV274540	hypothetical protein	-	6e-3	At3g56640	exocyst complex subunit Sec15-like family protein	O.I.	H.G.	S.X.
0.20	34.6	0.93	PtpAffx.208454.1.S1_at	pmrna16794	hypothetical protein	-	3e-1	At3g05920	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.20	34.6	0.92	PtpAffx.5430.2.S1_at	CN520438	hypothetical protein	-	4e-4	At5g47090	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	0.93	Ptp.314.1.A1_at	BU873794	hypothetical protein	-	2e-24	At5g57300	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.
0.19	32.7	0.92	PtpAffx.80063.3.A1_s_at	DN492066	hypothetical protein	-	4e-10	At5g48630	cyclin family protein	O.I.	H.G.	S.X.
0.18	30.8	0.93	PtpAffx.1192.1.A1_at	CV276864	hypothetical protein	-	6e-10	At1g51350	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.
0.18	30.8	0.94	PtpAffx.131235.1.S1_s_at	CK116485	hypothetical protein	-	8e-6	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.
0.17	29.1	0.93	PtpAffx.52166.1.A1_at	CV268523	hypothetical protein	-	5e+0	At5g46115	unknown protein	O.I.	H.G.	S.X.
0.17	29.1	0.91	Ptp.2697.1.S1_at	CK092312	hypothetical protein	-	1e-91	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.
0.15	25.3	0.92	PtpAffx.97165.1.A1_at	CV243827	-	-	1e-1	At5g13340	unknown protein	O.I.	H.G.	S.X.
0.15	25.3	0.93	Ptp.1416.1.A1_s_at	CV247793	hypothetical protein	-	2e-34	At5g48580	FKBP15-2	O.I.	H.G.	S.X.
0.14	23.5	0.93	PtpAffx.110877.1.S1_s_at	CK318006	hypothetical protein	-	1e+0	Atmg01300	-	O.I.	H.G.	S.X.
0.14	23.5	0.92	PtpAffx.5890.2.S1_a_at	CF232083	hypothetical protein	-	5e-3	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.
0.14	23.5	0.95	Ptp.5357.1.S1_at	CV237205	hypothetical protein	-	5e-69	At4g17530	ATRAB1C	O.I.	H.G.	S.X.
0.12	19.6	0.95	Ptp.4866.1.S1_at	CK111784	-	-	9e-105	At5g44240	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.12	19.6	0.93	Ptp.4216.1.S1_at	CV256909	glycosyl transferase	-	3e-45	At1g27600	glycosyl transferase family 43 protein	O.I.	H.G.	S.X.
0.12	19.6	0.93	PtpAffx.141227.1.A1_s_at	CV272556	hypothetical protein	-	6e-19	At5g48520	unknown protein	O.I.	H.G.	S.X.
0.12	19.6	0.92	PtpAffx.50507.1.A1_s_at	CV247777	-	-	2e-18	At5g55290	ATP synthase subunit H family protein	O.I.	H.G.	S.X.
0.11	18.1	0.94	Ptp.2558.1.S1_at	CK096344	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.
0.11	18.1	0.92	PtpAffx.44916.2.A1_at	CV241345	hypothetical protein	-	5e-13	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	O.I.	H.G.	S.X.
0.10	16.3	0.92	PtpAffx.123845.1.S1_s_at	AI161661	hypothetical protein	-	2e-21	At4g02500	XT2 (UDP-XYLOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.08	12.9	0.94	PtpAffx.139993.1.A1_at	CV282460	hypothetical protein	-	7e-3	At3g19420	ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)	O.I.	H.G.	S.X.
0.07	11.6	0.91	Ptp.273.1.S1_x_at	CK087938	hypothetical protein	-	2e-24	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.4 90.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.5 83.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.4 82.3 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.4	90.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.6482.1.S1_at
Gene name	predicted membrane protein
Homology with Arabidopsis	Similar to At5g36290: unknown protein (HF=4e-82)
Module size	31 genes
NF	0.17
%ile	32.4

Co-expression analysis

Gene ID PtpAffx.6482.1.S1_at Gene name predicted membrane protein Homology with ArabidopsisSimilar to At5g36290: unknown protein (HF=4e-82) Module size 31 genes NF 0.17 %ile 32.4

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.6482.1.S1_at

Gene name predicted membrane protein
Homology with Arabidopsis Similar to At5g36290: unknown protein (HF=4e-82)

Module size 31 genes

NF 0.17

%ile 32.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays