Co-expression analysis

Gene ID PtpAffx.64772.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g59040: pentatricopeptide (PPR) repeat-containing protein (HF=4e-12)
Module size 15 genes
NF 0.20
%ile 37.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7091.70.88PtpAffx.64772.1.S1_atCK107609hypothetical protein-4e-12At3g59040pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4875.40.91PtpAffx.210203.1.S1_atpmrna20098hypothetical protein-3e-2At1g64080unknown proteinO.I.H.G.S.X.
0.4875.40.91PtpAffx.26558.3.S1_s_atCN524616hypothetical protein-4e-1At3g26380glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family proteinO.I.H.G.S.X.
0.2645.20.92Ptp.3943.1.S1_atCV250102hypothetical protein-5e-8At5g43960nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2238.30.92PtpAffx.202439.1.S1_s_atpmrna4886hypothetical protein-5e-3At1g62981unknown proteinO.I.H.G.S.X.
0.2136.50.92PtpAffx.162795.1.S1_s_atBU888719hypothetical protein-2e+0At4g16500cysteine protease inhibitor family protein / cystatin family proteinO.I.H.G.S.X.
0.2136.50.93PtpAffx.208697.1.S1_atpmrna17254hypothetical protein-2e+0At4g30460glycine-rich proteinO.I.H.G.S.X.
0.1932.70.90PtpAffx.219157.1.S1_atpmrna34996hypothetical protein-2e-1At4g36240zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.1932.70.93PtpAffx.210307.1.S1_atpmrna20282hypothetical protein-1e-3At3g49400transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1932.70.92PtpAffx.81831.1.S1_atCV271583hypothetical protein-3e-2At5g37055SEF (SERRATED LEAVES AND EARLY FLOWERING)O.I.H.G.S.X.
0.1423.50.92PtpAffx.53559.1.S1_atDN499994--6e-2At4g02360unknown proteinO.I.H.G.S.X.
0.1423.50.93Ptp.4580.1.S1_atCV247339hypothetical protein-1e-1At4g17060unknown proteinO.I.H.G.S.X.
0.1118.10.93PtpAffx.146713.1.A1_atCV238136--4e-1At3g11940ATRPS5A (RIBOSOMAL PROTEIN 5A)O.I.H.G.S.X.
0.0914.60.92PtpAffx.134116.1.A1_atCV247887hypothetical protein-6e+0At3g52630-O.I.H.G.S.X.
0.0711.60.92Ptp.5850.1.S1_s_atBU831446hypothetical protein-4e-35At4g1810060S ribosomal protein L32 (RPL32A)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.095.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.791.8GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.482.3GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.381.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.381.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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