Co-expression analysis

Gene ID	PtpAffx.6368.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g44920: thylakoid lumenal 15 kDa protein, chloroplast (HF=4e-26)
Module size	6 genes
NF	0.48
%ile	78.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.97	PtpAffx.6368.1.S1_at	CV236586	hypothetical protein	-	4e-26	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.11597.1.A1_at	CV227799	hypothetical protein	-	8e-115	At4g35250	vestitone reductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.97	PtpAffx.61991.2.S1_s_at	CX173837	hypothetical protein	-	9e-27	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.3941.1.S1_at	CV230881	hypothetical protein	-	8e-40	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.97	Ptp.2552.1.S1_s_at	CV236937	hypothetical protein	-	5e-35	At1g74470	geranylgeranyl reductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.97	PtpAffx.5813.1.S1_at	CN524494	hypothetical protein	-	8e-21	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	99.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.3	98.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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