Co-expression analysis

Gene ID	PtpAffx.6229.2.S1_at
Gene name	light-harvesting complex II protein Lhcb2
Homology with Arabidopsis	Similar to At2g05070: LHCB2.2 (HF=4e-48)
Module size	31 genes
NF	0.33
%ile	58.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.6	0.89	PtpAffx.6229.2.S1_at	BP934327	light-harvesting complex II protein Lhcb2	-	4e-48	At2g05070	LHCB2.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.95	PtpAffx.56132.1.S1_at	CV276731	-	-	3e-8	At4g09650	ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.91	Ptp.2517.1.S1_at	CK318591	hypothetical protein	-	1e-19	At5g18660	PCB2 (PALE-GREEN AND CHLOROPHYLL B REDUCED 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.95	PtpAffx.19419.1.S1_at	CV280607	hypothetical protein	-	2e-16	At5g58260	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.91	PtpAffx.80252.1.S1_at	DN495033	-	-	3e-13	At1g52510	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.95	PtpAffx.31405.1.A1_at	DN493328	hypothetical protein	-	1e-39	At1g32080	membrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.95	PtpAffx.140.1.S1_at	CV271127	hypothetical protein	-	1e-32	At3g48420	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.93	PtpAffx.43698.1.A1_at	CV261034	-	-	2e-15	At1g74640	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.96	PtpAffx.31489.2.A1_a_at	CK089606	hypothetical protein	-	1e+0	At1g28007	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.212401.1.S1_at	pmrna24295	hypothetical protein	-	8e-6	At4g09650	ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.95	Ptp.5283.1.S1_s_at	CN518834	-	-	4e-1	At3g07390	AIR12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.95	Ptp.2781.1.S1_a_at	CV255996	hypothetical protein	-	5e-53	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.4470.4.S1_a_at	CK089698	hypothetical protein	-	7e-61	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.150078.1.S1_s_at	BU880077	hypothetical protein	-	4e-31	At1g09340	CRB (CHLOROPLAST RNA BINDING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	Ptp.2172.2.S1_s_at	CV264612	hypothetical protein	-	7e-43	At1g58290	HEMA1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.164020.1.S1_at	CK318557	hypothetical protein	-	6e-1	At3g13580	60S ribosomal protein L7 (RPL7D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	Ptp.1041.1.S1_at	CK090202	hypothetical protein	-	3e-45	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.93	PtpAffx.41533.1.A1_at	CV281142	hypothetical protein	-	3e-11	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.92	Ptp.7044.1.S1_at	DN489077	light-harvesting complex I protein Lhca5	-	4e-11	At1g45474	LHCA5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.95	PtpAffx.96771.1.A1_at	CV277192	hypothetical protein	-	8e-30	At3g12780	PGK1 (PHOSPHOGLYCERATE KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.100443.1.S1_at	CV283450	hypothetical protein	-	2e-16	At1g71500	Rieske (2Fe-2S) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	Ptp.6091.1.S1_at	CV281339	hypothetical protein	-	2e-33	At4g13500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	Ptp.5194.1.S1_at	CV240064	hypothetical protein	-	1e-20	At5g45680	FK506-binding protein 1 (FKBP13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.2898.1.S1_s_at	CV277541	catalase	-	1e-157	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	Ptp.3170.1.S1_at	DN499825	hypothetical protein	-	7e-12	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	PtpAffx.37920.2.A1_s_at	CV284037	thioredoxin m	-	3e-2	At3g56420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.97	Ptp.2327.1.A1_at	CV280155	hypothetical protein	-	1e-54	At1g09340	CRB (CHLOROPLAST RNA BINDING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.5585.1.S1_a_at	CV280308	hypothetical protein	-	3e-24	At4g27700	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	Ptp.819.1.S1_s_at	BU832654	hypothetical protein	-	4e-38	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.146249.1.S1_s_at	CX169389	hypothetical protein	-	9e-11	At1g09340	CRB (CHLOROPLAST RNA BINDING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.95	Ptp.4200.1.S1_s_at	CV278991	hypothetical protein	-	3e-73	At5g64040	PSAN	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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