Co-expression analysis

Gene ID	PtpAffx.62182.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g18170: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (HF=3e-2)
Module size	8 genes
NF	0.61
%ile	91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.62182.1.S1_a_at	CV261082	hypothetical protein	-	3e-2	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.3787.2.S1_a_at	BU814805	inner membrane protein /// inner membrane protein	-	4e-22	At2g28800	ALB3 (ALBINO 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.96	PtpAffx.70270.1.S1_at	CV241899	hypothetical protein	-	2e-47	At1g31190	IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.97	PtpAffx.205262.1.S1_s_at	pmrna10435	-	-	2e-1	At1g74520	ATHVA22A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.97	PtpAffx.32412.1.S1_a_at	CV282213	hypothetical protein	-	3e+0	At4g30390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	Ptp.4928.1.S1_at	CV283448	hypothetical protein	-	7e+0	Atmg00680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	Ptp.5036.1.S1_s_at	CV234626	hypothetical protein	-	7e-25	At5g12470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.5792.1.A1_at	CV280203	hypothetical protein	-	2e+0	At5g57345	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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