Co-expression analysis

Gene ID PtpAffx.61331.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g08490: CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE) (HF=8e-7)
Module size 6 genes
NF 0.10
%ile 19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.89PtpAffx.61331.1.A1_atDN484453--8e-7At1g08490CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)O.I.H.G.S.X.
0.1830.80.90Ptp.6271.1.S1_atDN500828hypothetical protein-3e-1At1g65090unknown proteinO.I.H.G.S.X.
0.1525.30.88Ptp.4324.1.S1_atDN486139--1e+0At5g36910THI2.2 (THIONIN 2.2)O.I.H.G.S.X.
0.1118.10.89Ptp.851.1.S1_atBI127099hypothetical protein-1e+1At5g09820plastid-lipid associated protein PAP / fibrillin family proteinO.I.H.G.S.X.
0.0711.60.87Ptp.1026.1.A1_atCK090134hypothetical protein-3e+0At1g73177BNS (BONSAI)O.I.H.G.S.X.
0.035.20.88Ptp.488.1.A1_atCK087424hypothetical protein-2e-1At1g28630unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.297.6GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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