Co-expression analysis

Gene ID PtpAffx.6105.4.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g48890: ATMP2 (HF=7e-2)
Module size 10 genes
NF 0.14
%ile 27.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9097.90.87PtpAffx.6105.4.S1_atCV266789hypothetical protein-7e-2At3g48890ATMP2O.I.H.G.S.X.
0.3153.70.97Ptp.1492.1.S1_s_atCV271929hypothetical protein-4e-33At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.2950.50.97PtpAffx.249.859.A1_atCV276451--4e-43At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.2950.50.97Ptp.8000.1.S1_atDN484105hypothetical protein-0Atmg01190-O.I.H.G.S.X.
0.2850.50.92PtpAffx.211711.1.S1_atpmrna22951hypothetical protein-3e-8At4g02010protein kinase family proteinO.I.H.G.S.X.
0.2747.10.89PtpAffx.224186.1.S1_atpmrna42489tir-nbs-lrr resistance protein-5e-2At2g03030Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.1729.10.93PtpAffx.213636.1.S1_atpmrna26637hypothetical protein-3e-1At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.058.30.92PtpAffx.102226.1.A1_atCV232979hypothetical protein-3e+0At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.
0.046.90.90Ptp.4496.1.S1_atCB239354hypothetical protein-2e-36At3g1095060S ribosomal protein L37a (RPL37aB)O.I.H.G.S.X.
0.046.90.90PtpAffx.106631.1.S1_atBP932546hypothetical protein-2e-8At3g59300unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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