Co-expression analysis

Gene ID PtpAffx.60992.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g65080: MAF5 (MADS AFFECTING FLOWERING 5) (HF=1e-3)
Module size 7 genes
NF 0.08
%ile 16.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.88PtpAffx.60992.1.S1_atDN500477hypothetical protein-1e-3At5g65080MAF5 (MADS AFFECTING FLOWERING 5)O.I.H.G.S.X.
0.0914.60.91PtpAffx.119039.1.S1_atDN486369hypothetical protein-8e-14At5g05970NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1)O.I.H.G.S.X.
0.0812.90.90PtpAffx.105944.1.S1_atAI165927--3e+0At4g37010caltractin, putative / centrin, putativeO.I.H.G.S.X.
0.069.80.92PtpAffx.26267.1.S1_atCK095584--4e-1At4g10920KELPO.I.H.G.S.X.
0.058.30.91Ptp.2342.2.A1_s_atCK089633hypothetical protein-7e-21At2g26280CID7O.I.H.G.S.X.
0.046.90.91PtpAffx.60083.1.S1_s_atBU836456cc-nbs-lrr resistance protein-1e+0At5g13880unknown proteinO.I.H.G.S.X.
0.046.90.93PtpAffx.16980.1.A1_a_atCK095992hypothetical protein-5e+0At3g02310SEP2 (SEPALLATA 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.596.1GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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