Co-expression analysis

Gene ID PtpAffx.6033.2.S1_at
Gene name histone deacetylase
Homology with ArabidopsisSimilar to At4g38130: HD1 (HISTONE DEACETYLASE 1) (HF=9e-55)
Module size 6 genes
NF 0.49
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.97PtpAffx.6033.2.S1_atBU889316histone deacetylase-9e-55At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.7192.60.96Ptp.2868.1.S1_atBU834773hypothetical protein-2e-5At1g36050unknown proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.54382.1.A1_atCV242304--3e-9At5g45420myb family transcription factorO.I.H.G.S.X.
0.4673.70.97Ptp.6870.1.S1_atDN489643hypothetical protein-3e-8At1g16220protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.2543.60.97Ptp.5452.1.S1_a_atCV268062hypothetical protein-8e-12At5g49540unknown proteinO.I.H.G.S.X.
0.2441.80.97Ptp.3496.1.S1_atBU895674hypothetical protein-2e-5At5g09880RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.297.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.097.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.497.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.497.0GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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