Co-expression analysis

Gene ID	PtpAffx.6033.1.S1_at
Gene name	histone deacetylase
Homology with Arabidopsis	Similar to At4g38130: HD1 (HISTONE DEACETYLASE 1) (HF=2e-91)
Module size	8 genes
NF	0.34
%ile	58.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.94	PtpAffx.6033.1.S1_at	CA932145	histone deacetylase	-	2e-91	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.205895.1.S1_at	pmrna11686	hypothetical protein	-	1e-9	At1g20830	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.11632.2.S1_at	BP933272	-	-	5e+0	At3g47070	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.222271.1.S1_at	pmrna39572	hypothetical protein	-	2e-108	At4g22720	glycoprotease M22 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.24171.2.A1_at	CV271709	-	-	2e-24	At3g06180	structural constituent of ribosome	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.125801.1.A1_s_at	BP930539	hypothetical protein	-	6e-6	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.151377.1.S1_at	BP936063	hypothetical protein	-	5e-2	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	PtpAffx.208380.1.S1_at	pmrna16665	hypothetical protein	-	3e-46	At5g48960	5' nucleotidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5	83.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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