CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.5999.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14)

Module size 6 genes

NF 0.38

%ile 65.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.97 PtpAffx.5999.1.S1_s_at BU894039 hypothetical protein - 3e-14 At5g42720 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.60 86.0 0.97 Ptp.6732.1.S1_at CK111922 histone 2 - 2e-27 At3g54560 HTA11 O.I. H.G. S.X.
0.50 78.6 0.98 Ptp.1743.1.A1_a_at CV271562 hypothetical protein - 3e-45 At4g26300 emb1027 (embryo defective 1027) O.I. H.G. S.X.
0.40 67.0 0.97 Ptp.4446.1.A1_s_at CV257969 hypothetical protein - 2e-118 At5g11170 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding O.I. H.G. S.X.
0.32 55.2 0.97 Ptp.8141.1.S1_at CV250890 hypothetical protein - 2e-83 At5g08290 YLS8 O.I. H.G. S.X.
0.15 25.3 0.97 Ptp.2290.1.S1_x_at CV278722 hypothetical protein - 6e-28 At1g09590 60S ribosomal protein L21 (RPL21A) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.97	PtpAffx.5999.1.S1_s_at	BU894039	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.
0.60	86.0	0.97	Ptp.6732.1.S1_at	CK111922	histone 2	-	2e-27	At3g54560	HTA11	O.I.	H.G.	S.X.
0.50	78.6	0.98	Ptp.1743.1.A1_a_at	CV271562	hypothetical protein	-	3e-45	At4g26300	emb1027 (embryo defective 1027)	O.I.	H.G.	S.X.
0.40	67.0	0.97	Ptp.4446.1.A1_s_at	CV257969	hypothetical protein	-	2e-118	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.
0.32	55.2	0.97	Ptp.8141.1.S1_at	CV250890	hypothetical protein	-	2e-83	At5g08290	YLS8	O.I.	H.G.	S.X.
0.15	25.3	0.97	Ptp.2290.1.S1_x_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	78.6	0.97	Ptp.3348.2.A1_a_at	CV247512	hypothetical protein	-	1e-25	At3g29280	unknown protein	O.I.	H.G.	S.X.
0.46	73.7	0.94	PtpAffx.50160.1.A1_at	CX654927	hypothetical protein	-	9e-18	At2g18950	HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.46	73.7	0.95	PtpAffx.112471.1.S1_at	DN496621	hypothetical protein	-	2e+0	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.
0.44	71.9	0.96	PtpAffx.1003.1.A1_at	CV261675	hypothetical protein	-	1e-14	At1g25260	acidic ribosomal protein P0-related	O.I.	H.G.	S.X.
0.44	71.9	0.97	Ptp.8141.1.S1_s_at	CV250890	hypothetical protein	-	2e-83	At5g08290	YLS8	O.I.	H.G.	S.X.
0.43	69.7	0.94	PtpAffx.155435.2.S1_at	BP934237	hypothetical protein	-	5e-41	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.
0.43	69.7	0.96	Ptp.6664.1.S1_at	CV254330	hypothetical protein	-	3e-51	At2g47640	small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative	O.I.	H.G.	S.X.
0.42	68.6	0.95	PtpAffx.146594.1.A1_at	CV270515	hypothetical protein	-	1e+0	At1g09250	transcription factor	O.I.	H.G.	S.X.
0.42	68.6	0.95	PtpAffx.21967.1.A1_s_at	CV236752	hypothetical protein	-	1e-44	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.161941.1.A1_at	CV263990	hypothetical protein	-	2e-28	At5g38890	exoribonuclease-related	O.I.	H.G.	S.X.
0.38	63.7	0.95	Ptp.327.1.S1_at	CV248348	hypothetical protein	-	7e-22	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	O.I.	H.G.	S.X.
0.38	63.7	0.96	PtpAffx.7498.1.S1_at	CV267996	hypothetical protein	-	7e-11	At2g21290	unknown protein	O.I.	H.G.	S.X.
0.37	62.3	0.93	Ptp.933.1.A1_s_at	CV240271	hypothetical protein	-	1e-1	At3g13460	ECT2	O.I.	H.G.	S.X.
0.36	61.6	0.95	Ptp.3984.1.A1_at	CV242251	beta-alanine n-methyltransferase related	-	5e-20	At3g53140	O-diphenol-O-methyl transferase, putative	O.I.	H.G.	S.X.
0.36	61.6	0.97	Ptp.4491.1.S1_at	CV276525	hypothetical protein	-	4e-32	At1g08110	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.
0.36	61.6	0.97	Ptp.1462.1.S1_s_at	BU866200	histone 2	-	2e-48	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.
0.36	61.6	0.97	PtpAffx.2543.1.S1_at	DN490912	hypothetical protein	-	8e-10	At1g04190	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.
0.35	59.7	0.95	Ptp.25.1.S1_at	CV266312	hypothetical protein	-	4e-26	At5g52840	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.
0.35	59.7	0.95	Ptp.6448.1.S1_at	CV234520	hypothetical protein	-	1e-17	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	O.I.	H.G.	S.X.
0.35	59.7	0.96	PtpAffx.27609.1.A1_at	DN492104	hypothetical protein	-	4e-4	At5g51960	-	O.I.	H.G.	S.X.
0.33	57.5	0.94	Ptp.562.1.S1_at	CV276917	hypothetical protein	-	2e-3	At3g49560	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.
0.33	57.5	0.94	PtpAffx.215654.1.S1_x_at	pmrna29958	hypothetical protein	-	3e-152	At1g12360	KEU (keule)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.5122.2.S1_x_at	CV239369	histone ubiquitination proteins group	-	3e-76	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.
0.33	57.5	0.96	Ptp.4889.1.S1_s_at	BU835677	hypothetical protein	-	1e-50	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.
0.33	57.5	0.96	PtpAffx.120425.1.A1_at	CV281099	hypothetical protein	-	9e-2	At5g10950	cylicin-related	O.I.	H.G.	S.X.
0.33	57.5	0.96	PtpAffx.215679.1.S1_s_at	pmrna30025	hypothetical protein	-	9e-9	At5g51410	LUC7 N_terminus domain-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.97	PtpAffx.41412.1.A1_at	CV235298	hypothetical protein	-	3e-51	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.
0.33	57.5	0.97	Ptp.2402.1.S1_s_at	CK092887	hypothetical protein	-	3e-8	At4g32560	paramyosin-related	O.I.	H.G.	S.X.
0.33	57.5	0.97	Ptp.2156.1.S1_s_at	CV237670	-	-	8e-21	At4g09320	NDPK1	O.I.	H.G.	S.X.
0.32	55.2	0.95	PtpAffx.1058.4.S1_s_at	AJ779362	hypothetical protein	-	6e-43	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.210238.1.S1_at	pmrna20159	hypothetical protein	-	2e-4	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.9494.2.S1_at	CV257622	-	-	3e-21	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.11165.1.S1_s_at	CK115433	-	-	5e-3	At2g34390	NIP2	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.50986.1.S1_at	CV235492	hypothetical protein	-	1e-11	At2g22080	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.97	Ptp.67.1.S1_at	CV247130	-	-	1e-33	At5g51700	PBS2 (PPHB SUSCEPTIBLE 2)	O.I.	H.G.	S.X.
0.30	52.0	0.95	Ptp.5865.1.A1_at	CV226320	hypothetical protein	-	3e-42	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.
0.30	52.0	0.96	PtpAffx.43439.1.A1_at	CV277899	hypothetical protein	-	2e+0	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.637.1.S1_at	CV236606	arginine methyltransferease	-	2e-28	At4g29510	PRMT11 (ARGININE METHYLTRANSFERASE 11)	O.I.	H.G.	S.X.
0.29	50.5	0.94	Ptp.7805.1.A1_at	CV244637	-	-	7e+0	At5g03500	transcription coactivator	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.40134.1.A1_at	CV255807	hypothetical protein	-	3e-11	At4g11120	translation elongation factor Ts (EF-Ts), putative	O.I.	H.G.	S.X.
0.29	50.5	0.97	Ptp.8031.1.A1_at	DN485987	hypothetical protein	-	5e-31	At4g38890	dihydrouridine synthase family protein	O.I.	H.G.	S.X.
0.29	50.5	0.97	PtpAffx.19408.1.S1_a_at	CV255062	hypothetical protein	-	3e-70	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.
0.29	50.5	0.97	Ptp.1365.1.S1_at	CV279589	hypothetical protein	-	4e-23	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.18825.1.A1_x_at	CV236303	-	-	1e-10	At3g62870	60S ribosomal protein L7A (RPL7aB)	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.131810.1.S1_at	DN491628	hypothetical protein	-	1e-14	At3g23620	brix domain-containing protein	O.I.	H.G.	S.X.
0.27	47.1	0.96	PtpAffx.61228.1.S1_at	CV259305	hypothetical protein	-	2e-12	At1g11240	unknown protein	O.I.	H.G.	S.X.
0.26	45.2	0.95	PtpAffx.218609.1.S1_x_at	pmrna34286	hypothetical protein	-	2e-4	At1g80890	unknown protein	O.I.	H.G.	S.X.
0.26	45.2	0.95	PtpAffx.56864.1.S1_at	CV254655	hypothetical protein	-	4e-1	At1g75200	flavodoxin family protein / radical SAM domain-containing protein	O.I.	H.G.	S.X.
0.25	43.6	0.97	PtpAffx.152289.1.S1_at	CV236910	hypothetical protein	-	4e-5	At3g12010	-	O.I.	H.G.	S.X.
0.25	43.6	0.97	Ptp.3068.1.S1_at	CV265985	hypothetical protein	-	6e-7	At3g09890	ankyrin repeat family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 95.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.1	95.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.5999.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14)
Module size	6 genes
NF	0.38
%ile	65.7

Co-expression analysis

Gene ID PtpAffx.5999.1.S1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14) Module size 6 genes NF 0.38 %ile 65.7

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.5999.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14)

Module size 6 genes

NF 0.38

%ile 65.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays