Co-expression analysis

Gene ID PtpAffx.5999.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14)
Module size 6 genes
NF 0.38
%ile 65.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.97PtpAffx.5999.1.S1_s_atBU894039hypothetical protein-3e-14At5g42720glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.6086.00.97Ptp.6732.1.S1_atCK111922histone 2-2e-27At3g54560HTA11O.I.H.G.S.X.
0.5078.60.98Ptp.1743.1.A1_a_atCV271562hypothetical protein-3e-45At4g26300emb1027 (embryo defective 1027)O.I.H.G.S.X.
0.4067.00.97Ptp.4446.1.A1_s_atCV257969hypothetical protein-2e-118At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.3255.20.97Ptp.8141.1.S1_atCV250890hypothetical protein-2e-83At5g08290YLS8O.I.H.G.S.X.
0.1525.30.97Ptp.2290.1.S1_x_atCV278722hypothetical protein-6e-28At1g0959060S ribosomal protein L21 (RPL21A)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.195.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.79383.1.S1_at, orthologous to the query gene, PtpAffx.5999.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.79383.1.S1_atAt5g42720--6e-2At1g49010myb family transcription factorO.I.H.G.S.X.
0.6786.3Ta.893.1.S1_atAt5g42720transcriptional activator-5e-2At2g28840ankyrin repeat family proteinO.I.H.G.S.X.
0.5072.4Ta.24532.1.A1_atAt5g42720--2e+0At3g10330transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)O.I.H.G.S.X.
0.4464.5Ta.22501.2.S1_a_atAt5g42720--1e+0At3g58400meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.3651.9Ta.10083.1.S1_atAt5g42720--1e+1At4g28150unknown proteinO.I.H.G.S.X.
0.045.8Ta.811.2.S1_a_atAt5g42720--4e+0At5g01712CPuORF48 (Conserved peptide upstream open reading frame 48)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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