CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.5999.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14)

Module size 6 genes

NF 0.38

%ile 65.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.97 PtpAffx.5999.1.S1_s_at BU894039 hypothetical protein - 3e-14 At5g42720 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.60 86.0 0.97 Ptp.6732.1.S1_at CK111922 histone 2 - 2e-27 At3g54560 HTA11 O.I. H.G. S.X.
0.50 78.6 0.98 Ptp.1743.1.A1_a_at CV271562 hypothetical protein - 3e-45 At4g26300 emb1027 (embryo defective 1027) O.I. H.G. S.X.
0.40 67.0 0.97 Ptp.4446.1.A1_s_at CV257969 hypothetical protein - 2e-118 At5g11170 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding O.I. H.G. S.X.
0.32 55.2 0.97 Ptp.8141.1.S1_at CV250890 hypothetical protein - 2e-83 At5g08290 YLS8 O.I. H.G. S.X.
0.15 25.3 0.97 Ptp.2290.1.S1_x_at CV278722 hypothetical protein - 6e-28 At1g09590 60S ribosomal protein L21 (RPL21A) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 95.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os06g0607000, orthologous to the query gene, PtpAffx.5999.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os06g0607000 At5g42720 - Beta-1,3-glucanase-like protein 1e-3 At2g26600 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.38 46.9 Os08g0129700 At5g42720 - NAD-dependent epimerase/dehydratase family protein 7e-14 At1g30620 MUR4 (MURUS 4) O.I. H.G. S.X.
0.35 41.7 Os02g0590800 At5g42720 - Protein kinase domain containing protein 1e-12 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) O.I. H.G. S.X.
0.27 27.5 Os02g0518100 At5g42720 - Protein of unknown function DUF803 family protein 5e-21 At3g26670 - O.I. H.G. S.X.
0.07 3.7 Os02g0729700 At5g42720 - Leucine zipper, homeobox-associated domaincontaining protein 4e-2 At5g66700 HB53 O.I. H.G. S.X.
0.05 2.5 Os07g0501900 At5g42720 - Zn-finger, RING domain containing protein 4e-19 At4g28370 protein binding / zinc ion binding O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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