Co-expression analysis

Gene ID PtpAffx.5999.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14)
Module size 6 genes
NF 0.38
%ile 65.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.97PtpAffx.5999.1.S1_s_atBU894039hypothetical protein-3e-14At5g42720glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.6086.00.97Ptp.6732.1.S1_atCK111922histone 2-2e-27At3g54560HTA11O.I.H.G.S.X.
0.5078.60.98Ptp.1743.1.A1_a_atCV271562hypothetical protein-3e-45At4g26300emb1027 (embryo defective 1027)O.I.H.G.S.X.
0.4067.00.97Ptp.4446.1.A1_s_atCV257969hypothetical protein-2e-118At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.3255.20.97Ptp.8141.1.S1_atCV250890hypothetical protein-2e-83At5g08290YLS8O.I.H.G.S.X.
0.1525.30.97Ptp.2290.1.S1_x_atCV278722hypothetical protein-6e-28At1g0959060S ribosomal protein L21 (RPL21A)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.195.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g42720, orthologous to the query gene, PtpAffx.5999.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6882.2At5g42720834281glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOO.I.H.G.S.X.
0.8592.4At5g62960836416unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.8190.4At5g67460836882glycosyl hydrolase family protein 17F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFMO.I.H.G.S.X.
0.7788.0At3g05620819728pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.H.G.S.X.
0.7586.9At3g01670821096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.7586.9At1g79430844281APL (ALTERED PHLOEM DEVELOPMENT)Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.O.I.H.G.S.X.
0.7586.9At5g25490832624zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOFO.I.H.G.S.X.
0.7385.5At1g23530838962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.7385.5At1g13050837862-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOBVO.I.H.G.S.X.
0.7284.8At3g24110821997calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.6882.2At1g68430843172unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.6579.6At3g20570821604plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMVO.I.H.G.S.X.
0.6378.1At3g01680821097unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.7At5g07710830664exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOPO.I.H.G.S.X.
0.5974.7At5g26190832688DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;POMO.I.H.G.S.X.
0.5873.8At1g75720843906unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.5773.8At3g26350822239-F:unknown;P:unknown;C:chloroplast;MPFOVBAO.I.H.G.S.X.
0.5570.6At5g03530831810RABC2A (RAB GTPASE HOMOLOG C2A)Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.O.I.H.G.S.X.
0.5368.6At2g32280817788unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5065.3At4g13600826993-F:unknown;P:unknown;C:unknown;PFOBMO.I.H.G.S.X.
0.4963.5At4g33490829486aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMFO.I.H.G.S.X.
0.4862.5At2g466303768746unknown proteinF:unknown;P:unknown;C:chloroplastO.I.H.G.S.X.
0.4862.5At2g34540818017unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.4457.2At2g39830818570DAR2 (DA1-RELATED PROTEIN 2)F:zinc ion binding;P:unknown;C:chloroplast;MOPFBO.I.H.G.S.X.
0.4457.2At1g65910842903anac028 (Arabidopsis NAC domain containing protein 28)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POMO.I.H.G.S.X.
0.4355.3At4g21310827879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4355.3At2g18380816353transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOO.I.H.G.S.X.
0.4253.9At5g18970832015AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;PO.I.H.G.S.X.
0.4152.4At1g63310842637-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4152.4At1g06490837160ATGSL07 (glucan synthase-like 7)encodes a gene similar to callose synthaseO.I.H.G.S.X.
0.3948.4At4g17910827515transferase, transferring acyl groupsF:transferase activity, transferring acyl groups;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPOO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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