Co-expression analysis

Gene ID PtpAffx.59940.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At2g43580: chitinase, putative (HF=1e-3)
Module size 6 genes
NF 0.45
%ile 74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4471.90.85PtpAffx.59940.1.S1_s_atCX657241--1e-3At2g43580chitinase, putativeO.I.H.G.S.X.
0.5582.20.89PtpAffx.217430.1.S1_s_atpmrna32684hypothetical protein-5e+0At4g02520ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2)O.I.H.G.S.X.
0.5582.20.93PtpAffx.214983.1.S1_s_atpmrna28919hypothetical protein-3e-1At4g31960unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.217705.1.S1_x_atpmrna33069hypothetical protein-8e-142Atcg01250-O.I.H.G.S.X.
0.3661.60.87PtpAffx.215857.1.S1_x_atpmrna30280--4e+0At3g18940clast3-relatedO.I.H.G.S.X.
0.2340.50.93PtpAffx.217524.1.S1_s_atpmrna32819hypothetical protein-0Atcg01280-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.896.4GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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