Co-expression analysis

Gene ID	PtpAffx.5989.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g25880: ATNADP-ME3 (NADP-malic enzyme 3) (HF=6e-8)
Module size	12 genes
NF	0.39
%ile	67.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.51	78.9	0.91	PtpAffx.5989.2.S1_s_at	CV259773	hypothetical protein	-	6e-8	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.92	Ptp.3568.1.S1_at	DN493064	hypothetical protein	-	8e-16	At4g24290	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.93	PtpAffx.212083.1.S1_at	pmrna23708	hypothetical protein	-	9e-1	At5g14930	SAG101 (SENESCENCE-ASSOCIATED GENE 101)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.92	PtpAffx.162546.1.A1_at	CV272261	hypothetical protein	-	1e-3	At5g52600	AtMYB82 (myb domain protein 82)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.92	PtpAffx.32930.1.A1_at	CK095139	hypothetical protein	-	2e-1	At1g14185	glucose-methanol-choline (GMC) oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.9177.1.S1_at	CK105027	-	-	3e-1	At4g08260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.92	PtpAffx.57544.1.A1_at	CV266909	-	-	3e-1	At3g07920	translation initiation factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	PtpAffx.208122.1.S1_at	pmrna16132	hypothetical protein	-	2e+0	At1g22510	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.93	PtpAffx.147936.1.S1_s_at	BP924717	hypothetical protein	-	1e-21	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.225395.1.S1_s_at	pmrna44716	hypothetical protein	-	3e-5	At1g61430	S-locus protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.92	PtpAffx.209542.1.S1_at	pmrna18907	hypothetical protein	-	5e-1	At2g32200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.92	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage