Co-expression analysis

Gene ID PtpAffx.58826.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g34620: mitochondrial transcription termination factor-related / mTERF-related (HF=5e-1)
Module size 6 genes
NF 0.39
%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3762.30.79PtpAffx.58826.1.A1_atCK089170--5e-1At2g34620mitochondrial transcription termination factor-related / mTERF-relatedO.I.H.G.S.X.
0.6086.00.82PtpAffx.225085.1.S1_s_atpmrna44181hypothetical protein-4e+0At5g65274-O.I.H.G.S.X.
0.5078.60.80PtpAffx.70210.2.S1_a_atDN494057hypothetical protein-9e-1At3g48720transferase family proteinO.I.H.G.S.X.
0.3661.60.83PtpAffx.219256.1.S1_atpmrna35121hypothetical protein-3e+0At1g53400unknown proteinO.I.H.G.S.X.
0.2950.50.80PtpAffx.112707.1.A1_atDN486456--1e+1At5g01445unknown proteinO.I.H.G.S.X.
0.2950.50.80PtpAffx.225767.1.S1_atpmrna45350hypothetical protein-2e-1At4g27290ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
6.197.6GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.992.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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