Co-expression analysis

Gene ID	PtpAffx.58511.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g09290: TAC1 (TELOMERASE ACTIVATOR1) (HF=1e+0)
Module size	9 genes
NF	0.16
%ile	30.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.6	0.91	PtpAffx.58511.1.S1_s_at	BI128469	hypothetical protein	-	1e+0	At3g09290	TAC1 (TELOMERASE ACTIVATOR1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.95	PtpAffx.214039.1.S1_at	pmrna27339	hypothetical protein	-	6e-25	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	PtpAffx.211120.1.S1_at	pmrna21843	hypothetical protein	-	5e-3	At3g03600	RPS2 (RIBOSOMAL PROTEIN S2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	PtpAffx.26402.1.S1_at	CK099588	hypothetical protein	-	2e+0	At1g15480	DNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.96	PtpAffx.129645.1.S1_at	CA932058	hypothetical protein	-	1e-13	At4g21150	HAP6 (HAPLESS 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.97	Ptp.1851.1.S1_s_at	CV250325	hypothetical protein	-	8e-58	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	PtpAffx.120271.1.S1_at	CN523236	hypothetical protein	-	4e-10	At1g03110	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.95	Ptp.2183.1.S1_s_at	CK113874	hypothetical protein	-	3e-4	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.95	PtpAffx.161309.1.S1_s_at	CN520197	hypothetical protein	-	2e-6	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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