Co-expression analysis

Gene ID PtpAffx.58504.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g16850: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (HF=5e-3)
Module size 7 genes
NF 0.07
%ile 15.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.87PtpAffx.58504.1.S1_atCK102969hypothetical protein-5e-3At3g16850glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.3357.50.87PtpAffx.108502.1.A1_a_atBI127008--8e-30At3g48030hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1118.10.89PtpAffx.202121.1.S1_atpmrna4240hypothetical protein-1e-19At3g60240-O.I.H.G.S.X.
0.058.30.87PtpAffx.17980.4.A1_atCV271763--4e-1At2g34200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.058.30.88Ptp.375.1.A1_atCK088699hypothetical protein-4e+0At4g26820-O.I.H.G.S.X.
0.046.90.86PtpAffx.207782.1.S1_atpmrna15473--7e-22At3g11040glycosyl hydrolase family 85 proteinO.I.H.G.S.X.
0.046.90.88PtpAffx.215309.1.S1_atpmrna29415hypothetical protein-8e-1At1g78020senescence-associated protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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