Co-expression analysis

Gene ID PtpAffx.5765.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g55140: RNA binding / ribonuclease III (HF=2e-13)
Module size 8 genes
NF 0.15
%ile 29.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7895.10.90PtpAffx.5765.1.A1_atCV244528hypothetical protein-2e-13At1g55140RNA binding / ribonuclease IIIO.I.H.G.S.X.
0.4774.60.92PtpAffx.56476.2.A1_a_atCV244264--8e-12At2g30695-O.I.H.G.S.X.
0.2340.50.93PtpAffx.49520.1.A1_a_atCV282205hypothetical protein-1e-1At2g01870unknown proteinO.I.H.G.S.X.
0.2238.30.91PtpAffx.25946.2.A1_atCV236894hypothetical protein-2e-15At1g48450unknown proteinO.I.H.G.S.X.
0.1525.30.92Ptp.5057.1.S1_a_atCV244905hypothetical protein-7e-6At4g02725unknown proteinO.I.H.G.S.X.
0.1219.60.92PtpAffx.222001.1.S1_atpmrna39186hypothetical protein-1e-12At4g36810GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1)O.I.H.G.S.X.
0.0711.60.93PtpAffx.29245.1.A1_atBP936612hypothetical protein-2e-8At1g02910LPA1 (LOW PSII ACCUMULATION1)O.I.H.G.S.X.
0.069.80.92PtpAffx.204125.1.S1_atpmrna8136hypothetical protein-6e-7At5g39210CRR7 (CHLORORESPIRATORY REDUCTION 7)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.193.2GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.092.9GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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