Co-expression analysis

Gene ID	PtpAffx.5765.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g55140: RNA binding / ribonuclease III (HF=2e-13)
Module size	8 genes
NF	0.15
%ile	29.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	95.1	0.90	PtpAffx.5765.1.A1_at	CV244528	hypothetical protein	-	2e-13	At1g55140	RNA binding / ribonuclease III	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.92	PtpAffx.56476.2.A1_a_at	CV244264	-	-	8e-12	At2g30695	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.49520.1.A1_a_at	CV282205	hypothetical protein	-	1e-1	At2g01870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.91	PtpAffx.25946.2.A1_at	CV236894	hypothetical protein	-	2e-15	At1g48450	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	Ptp.5057.1.S1_a_at	CV244905	hypothetical protein	-	7e-6	At4g02725	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	PtpAffx.222001.1.S1_at	pmrna39186	hypothetical protein	-	1e-12	At4g36810	GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.93	PtpAffx.29245.1.A1_at	BP936612	hypothetical protein	-	2e-8	At1g02910	LPA1 (LOW PSII ACCUMULATION1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.92	PtpAffx.204125.1.S1_at	pmrna8136	hypothetical protein	-	6e-7	At5g39210	CRR7 (CHLORORESPIRATORY REDUCTION 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	93.2	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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