Co-expression analysis

Gene ID	PtpAffx.57573.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g26650: RNA recognition motif (RRM)-containing protein (HF=2e-37)
Module size	7 genes
NF	0.44
%ile	73.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	0.94	PtpAffx.57573.1.S1_at	CK113497	hypothetical protein	-	2e-37	At4g26650	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.92	PtpAffx.209256.1.S1_at	pmrna18293	hypothetical protein	-	3e-30	At3g11040	glycosyl hydrolase family 85 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	PtpAffx.29984.1.S1_s_at	BU889128	hypothetical protein	-	3e-7	At2g42490	copper amine oxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	PtpAffx.210532.1.S1_at	pmrna20647	hypothetical protein	-	3e-19	At1g18950	aminoacyl-tRNA synthetase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.139005.1.S1_at	CX170953	NAC domain protein, IPR003441	-	4e-13	At5g04410	NAC2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.222947.1.S1_at	pmrna40682	hypothetical protein	-	3e-15	At5g57460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	Ptp.4777.1.S1_at	AJ769514	hypothetical protein	-	2e-24	At3g62600	ATERDJ3B	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.4	97.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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