Co-expression analysis

Gene ID	PtpAffx.57544.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g07920: translation initiation factor (HF=3e-1)
Module size	13 genes
NF	0.58
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	88.6	0.92	PtpAffx.57544.1.A1_at	CV266909	-	-	3e-1	At3g07920	translation initiation factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.86	97.4	0.93	PtpAffx.200248.1.S1_at	pmrna481	hypothetical protein	-	3e-7	At3g43740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.92	PtpAffx.204828.1.S1_at	pmrna9522	-	-	2e-1	At4g15393	CYP702A5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	0.92	Ptp.3568.1.S1_at	DN493064	hypothetical protein	-	8e-16	At4g24290	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.225157.1.S1_at	pmrna44294	hypothetical protein	-	1e-13	At1g14550	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.93	PtpAffx.32930.1.A1_at	CK095139	hypothetical protein	-	2e-1	At1g14185	glucose-methanol-choline (GMC) oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.92	PtpAffx.765.1.A1_at	CV276457	hypothetical protein	-	3e-16	At3g04520	THA2 (Threonine Aldolase 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.94	PtpAffx.44290.1.A1_at	CV238019	hypothetical protein	-	3e-1	At2g29340	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.130922.1.S1_s_at	AJ773860	-	-	5e-6	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.211742.1.S1_at	pmrna23011	hypothetical protein	-	2e-4	At4g16120	COBL7 (COBRA-LIKE 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.209542.1.S1_at	pmrna18907	hypothetical protein	-	5e-1	At2g32200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	PtpAffx.134772.1.S1_s_at	DN483641	ABC transporter family, retinal flippase subfamily	-	1e-3	At5g61690	ATATH15	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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