Co-expression analysis

Gene ID	PtpAffx.5746.4.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g02180: SP1L3 (SPIRAL 1-LIKE3) (HF=9e-10)
Module size	27 genes
NF	0.24
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	0.91	PtpAffx.5746.4.S1_s_at	CV225347	-	-	9e-10	At3g02180	SP1L3 (SPIRAL 1-LIKE3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.92	Ptp.4315.1.S1_at	CK087345	hypothetical protein	-	1e-8	At2g22260	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	Ptp.7815.1.A1_at	CX185861	hypothetical protein	-	1e-1	At2g19360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	Ptp.6740.1.S1_x_at	CV277438	hypothetical protein	-	6e-22	At5g64400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	Ptp.7760.1.S1_at	DN499495	hypothetical protein	-	5e+0	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	Ptp.1591.1.S1_s_at	CV267457	hypothetical protein	-	3e-24	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	Ptp.7094.1.S1_at	CV226959	hypothetical protein	-	8e-6	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.93	Ptp.2400.1.S1_at	CK092844	hypothetical protein	-	3e-10	At2g04660	APC2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	Ptp.3677.1.S1_s_at	CV255022	hypothetical protein	-	0	Atcg00900	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.94	PtpAffx.156973.1.S1_at	CK091178	hypothetical protein	-	1e-60	At2g02470	AL6 (ALFIN-LIKE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.93	PtpAffx.4009.1.S1_at	CK092134	hypothetical protein	-	1e+0	At5g39100	GLP6 (GERMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.93	PtpAffx.109871.1.S1_at	CV259318	hypothetical protein	-	2e-81	At1g24764	ATMAP70-2 (microtubule-associated proteins 70-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.215548.1.S1_x_at	pmrna29808	hypothetical protein	-	9e-74	Atcg00670	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.76374.1.S1_at	CV233375	hypothetical protein	-	2e+0	At1g20300	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	PtpAffx.29211.1.S1_s_at	CK317782	hypothetical protein	-	3e-8	At4g34210	ASK11 (ARABIDOPSIS SKP1-LIKE 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	PtpAffx.59907.1.A1_at	CV226270	hypothetical protein	-	4e-14	At2g15860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.12342.2.S1_s_at	CV256206	aquaporin, MIP family, PIP subfamily	-	4e-73	At4g23400	PIP1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.4277.1.S1_a_at	CV265521	-	-	1e-131	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	Ptp.6053.1.S1_at	CK107375	hypothetical protein	-	3e-4	At4g23885	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	PtpAffx.202412.1.S1_at	pmrna4848	hypothetical protein	-	3e+0	At5g40500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	PtpAffx.9757.1.A1_at	CK096700	hypothetical protein	-	2e+0	At1g60670	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	Ptp.6740.1.S1_at	CV277438	hypothetical protein	-	6e-22	At5g64400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	Ptp.2246.1.A1_at	CK087617	-	-	3e-73	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.95	PtpAffx.5471.1.A1_a_at	CV252337	hypothetical protein	-	3e-15	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	Ptp.2592.3.S1_x_at	CV281081	thioredoxin h	-	9e-9	At1g19730	ATTRX4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	Ptp.2565.1.A1_at	CV242155	hypothetical protein	-	2e-45	At5g35360	CAC2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.93	Ptp.1497.2.S1_x_at	CV243508	s-adenosylmethionine synthetase 5	-	3e-179	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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