Co-expression analysis

Gene ID	PtpAffx.57260.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g11545: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (HF=7e-13)
Module size	6 genes
NF	0.36
%ile	62.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.86	PtpAffx.57260.1.S1_at	CV232927	-	-	7e-13	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.87	PtpAffx.36865.1.A1_at	CV253529	fasciclin-like arabinogalactan protein 9.2	-	7e-3	At2g20520	FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.89	PtpAffx.201317.1.S1_at	pmrna2619	hypothetical protein	-	8e-49	At3g58120	BZIP61	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.84	PtpAffx.149928.1.S1_at	BU890641	tubulin, beta chain	-	2e-48	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.86	PtpAffx.29105.1.S1_at	CV244552	hypothetical protein	-	1e-1	At1g58460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.86	PtpAffx.222942.1.S1_at	pmrna40676	hypothetical protein	-	3e+0	At5g42895	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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