Co-expression analysis

Gene ID	PtpAffx.57186.1.A1_a_at
Gene name	hypothetical protein /// gdp-mannose 4,6-dehydratase
Homology with Arabidopsis	Similar to At3g51160: MUR1 (MURUS 1) (HF=8e-49)
Module size	6 genes
NF	0.47
%ile	76.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	PtpAffx.57186.1.A1_a_at	CV233728	hypothetical protein /// gdp-mannose 4,6-dehydratase	-	8e-49	At3g51160	MUR1 (MURUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	Ptp.7279.1.A1_at	CV248221	vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine	-	1e-178	At5g17920	ATMS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.1025.2.A1_x_at	CV228295	vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine	-	1e-153	At5g17920	ATMS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.92	PtpAffx.3761.1.A1_x_at	M73430.1	-	-	4e-120	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	Ptp.4952.1.S1_at	CV228949	hypothetical protein	-	4e-89	At1g59900	AT-E1 ALPHA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.249.708.A1_s_at	CV258093	hypothetical protein	-	1e+1	Atcg00380	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.6	97.2	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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