CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.57073.1.A1_s_at

Gene name thioredoxin m
Homology with Arabidopsis Similar to At3g15360: TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) (HF=5e-7)

Module size 11 genes

NF 0.60

%ile 89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 83.9 0.97 PtpAffx.57073.1.A1_s_at CV279168 thioredoxin m - 5e-7 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) O.I. H.G. S.X.
0.73 93.6 0.98 Ptp.5165.1.A1_s_at BP930275 - - 2e-15 At2g39730 RCA (RUBISCO ACTIVASE) O.I. H.G. S.X.
0.63 88.1 0.98 Ptp.5240.1.S1_s_at CX174264 hypothetical protein - 9e-14 At1g03130 PSAD-2 (photosystem I subunit D-2) O.I. H.G. S.X.
0.63 88.1 0.99 PtpAffx.4650.2.A1_at CV282694 hypothetical protein - 2e-44 At4g01150 unknown protein O.I. H.G. S.X.
0.58 84.2 0.98 PtpAffx.249.25.A1_s_at CV283699 hypothetical protein - 2e-7 At2g47400 CP12-1 O.I. H.G. S.X.
0.58 84.2 0.98 PtpAffx.148341.1.S1_s_at CN523541 light-harvesting complex II protein Lhcb5 - 2e-17 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) O.I. H.G. S.X.
0.55 82.2 0.99 Ptp.5386.1.S1_s_at CX172919 hypothetical protein - 2e-12 At3g48570 protein transport protein SEC61 gamma subunit, putative O.I. H.G. S.X.
0.53 80.5 0.99 PtpAffx.249.164.A1_s_at CV276899 hypothetical protein - 2e-33 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) O.I. H.G. S.X.
0.50 78.6 0.98 PtpAffx.5813.1.S1_at CN524494 hypothetical protein - 8e-21 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.50 78.6 0.99 Ptp.5918.2.S1_a_at CV277094 hypothetical protein - 6e-34 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) O.I. H.G. S.X.
0.48 75.4 0.99 Ptp.2148.1.S1_s_at CV236843 hypothetical protein - 3e-27 At1g31330 PSAF (photosystem I subunit F) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 96.8 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.5 83.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5 83.5 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.4 82.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.4 82.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.4 82.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.3 81.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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