Co-expression analysis

Gene ID PtpAffx.5626.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g22070: TGA3 (HF=4e-17)
Module size 6 genes
NF 0.59
%ile 89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95PtpAffx.5626.1.A1_atCV261500hypothetical protein-4e-17At1g22070TGA3O.I.H.G.S.X.
0.8096.00.94PtpAffx.5626.4.S1_a_atCV240734hypothetical protein-2e-9At1g22070TGA3O.I.H.G.S.X.
0.5380.50.94PtpAffx.5626.3.S1_atBU871093hypothetical protein-1e+0At4g32714SCRL25 (SCR-Like 25)O.I.H.G.S.X.
0.4471.90.94PtpAffx.82395.1.S1_s_atCV248397hypothetical protein-7e-7At3g02050KUP3 (K+ UPTAKE TRANSPORTER 3)O.I.H.G.S.X.
0.4067.00.95PtpAffx.58636.1.S1_atCK096620SET domain protein-2e-44At4g02020SWN (SWINGER)O.I.H.G.S.X.
0.3661.60.95PtpAffx.145392.1.A1_atBP929941hypothetical protein-1e-13At3g20500PAP18 (PURPLE ACID PHOSPHATASE 18)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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